PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G15920.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 302aa    MW: 31257.8 Da    PI: 8.4861
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G15920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.34.7e-33501931121
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssa 70 
                      aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+i+WL+++a  ai+ l+++                        +++  
  LPERR12G15920.1  50 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIDWLIRAAASAIDSLPSLdcssfllpsppiptpatatadadgDNDVT 143
                      6899********************************************************************9999877655444322211111 PP

              TCP  71 seceaesssssasnsssg.......kaaksaakskksqksaasalnlak.esrakarar 121
                      se++++ss                  + + +++ +++q+++a++  +a+  + a a a 
  LPERR12G15920.1 144 SETSKSSS---------VlslaagnGNGNGNENVEQQQQQQATMAYYAAaAHMAAAPAM 193
                      22233333.........133433332223333333344444434444442444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3152174IPR005333Transcription factor, TCP
PROSITE profilePS5136930.89653111IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEEFAVAGNN NGSNNKKRPR GALAAVAGNN GASSPATAAA WRTSRVARAA AGGKDRHSKV  60
VTSRGLRDRR VRLSVPTAIA FYDIQDRLGV DQPSKAIDWL IRAAASAIDS LPSLDCSSFL  120
LPSPPIPTPA TATADADGDN DVTSETSKSS SVLSLAAGNG NGNGNENVEQ QQQQQATMAY  180
YAAAAHMAAA PAMAFEMAPA MPHHHLAFSQ ELNATVAFER GTLQSNAVAA ASLWPPPAAA  240
SQHQQYPFLL QRFAAAPSEV AGLPFFLAGG GGGGGGAAGA PVAANVGERR LQLWDFKEER  300
KS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149688e-90AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004578e-90BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442549.13e-85hypothetical protein SORBIDRAFT_08g021690
RefseqXP_010237011.13e-85PREDICTED: transcription factor PCF8
SwissprotA2ZMR97e-88PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A0D9Y1H20.0A0A0D9Y1H2_9ORYZ; Uncharacterized protein
STRINGBGIOSGA037799-PA2e-85(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.15e-30plastid transcription factor 1